micom.algorithms¶

Implements additional analysis algorithms for communities.

Functions¶

`jaccard`(inclusion)	Calculate jaccard distances for a community.
`euclidean`(inclusion)	Calculate euclidean distances for a community.
`reaction_matrix`(files)	Create a matrix of reactions x models.
`metabolic_dist`(reactions[, metric])	Calculate the metabolic distances between all members.

Module Contents¶

micom.algorithms.jaccard(inclusion)[source]¶: Calculate jaccard distances for a community.

micom.algorithms.euclidean(inclusion)[source]¶: Calculate euclidean distances for a community.

micom.algorithms.reaction_matrix(files)[source]¶: Create a matrix of reactions x models.

micom.algorithms.metabolic_dist(reactions, metric=jaccard)[source]¶: Calculate the metabolic distances between all members.