micom.algorithms

Implements additional analysis algorithms for communities.

Module Contents

Functions

jaccard(inclusion)	Calculate jaccard distances for a community.
euclidean(inclusion)	Calculate euclidean distances for a community.
reaction_matrix(files)	Create a matrix of reactions x models.
metabolic_dist(reactions[, metric])	Calculate the metabolic distances between all members.

micom.algorithms.jaccard(inclusion)

Calculate jaccard distances for a community.

micom.algorithms.euclidean(inclusion)

Calculate euclidean distances for a community.

micom.algorithms.reaction_matrix(files)

Create a matrix of reactions x models.

micom.algorithms.metabolic_dist(reactions, metric=jaccard)

Calculate the metabolic distances between all members.