micom.interaction.summary¶
Functions to summarize interactions over all metabolites.
Functions¶
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Summarize the overall interactions. |
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Summarize interactions to key quantities. |
Module Contents¶
- micom.interaction.summary._summarize(ints: pandas.DataFrame) pandas.DataFrame [source]¶
Summarize the overall interactions.
- micom.interaction.summary.summarize_interactions(ints: pandas.DataFrame) pandas.DataFrame [source]¶
Summarize interactions to key quantities.
- Parameters:
ints (pandas.DataFrame) – The interactions for individual metabolites calculated before.
- Returns:
The summarized interactions contaning the total flux, mass flux, carbon flux, nitrogen flux and number of interactions between any pair of taxa in that sample.
- Return type:
pandas.DataFrame