micom.annotation

Helper to annotate metabolites and species.

Module Contents

Functions

flatten(d)

Flatten a dictionary into strings.

annotate(ids, community, what='reaction')

Annotate a list of entities.

annotate_metabolites_from_exchanges(com)

Annotate exchange reactions by their metabolite.

micom.annotation.flatten(d)[source]

Flatten a dictionary into strings.

micom.annotation.annotate(ids, community, what='reaction')[source]

Annotate a list of entities.

micom.annotation.annotate_metabolites_from_exchanges(com)[source]

Annotate exchange reactions by their metabolite.