micom.annotation¶ Helper to annotate metabolites and species. Module Contents¶ Functions¶ flatten(d) Flatten a dictionary into strings. annotate(ids, community[, what]) Annotate a list of entities. annotate_metabolites_from_exchanges(com) Annotate exchange reactions by their metabolite. micom.annotation.flatten(d)[source]¶ Flatten a dictionary into strings. micom.annotation.annotate(ids, community, what='reaction')[source]¶ Annotate a list of entities. micom.annotation.annotate_metabolites_from_exchanges(com)[source]¶ Annotate exchange reactions by their metabolite.